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NAC070 NAC domain containing protein 70 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826627, updated on 18-Sep-2024

Summary

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Official Symbol
NAC070
Official Full Name
NAC domain containing protein 70
Primary source
TAIR:AT4G10350
Locus tag
AT4G10350
See related
Araport:AT4G10350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ANAC070; BEARSKIN 2; BRN2; F24G24.150; F24G24_150; NAC domain containing protein 70
Summary
NAC domain protein. SMB, BRN1, and BRN2 act to regulate root cap maturation, in a partially redundant fashion.BRN1 and BRN2, control the cell wall maturation processes that are required to detach root cap layers from the root.
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Genomic context

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See NAC070 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (6415120..6416961, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene light harvesting complex of photosystem II 5 Neighboring gene ncRNA Neighboring gene TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SOMBRERO, BEARSKIN1, and BEARSKIN2 regulate root cap maturation in Arabidopsis. Bennett T, et al. Plant Cell, 2010 Mar. PMID 20197506, Free PMC Article
  2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001340661.1
NM_117103.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in plant-type secondary cell wall biogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of gene expression IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within root cap development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in root cap development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
NAC domain containing protein 70
NP_192773.1
  • NAC domain containing protein 70 (NAC070); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 15 (TAIR:AT1G33280.1); Has 2970 Blast hits to 2965 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2970; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6415120..6416961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117103.3 → NP_192773.1  NAC domain containing protein 70 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192773.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SV87
    UniProtKB/TrEMBL
    A0A178UTT1, A0A5S9XQZ3, A0A654FN12
    Conserved Domains (1) summary
    pfam02365
    Location:10 → 137
    NAM; No apical meristem (NAM) protein

  2. NM_001340661.1 → NP_001329933.1  NAC domain containing protein 70 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UTT1, A0A1P8B997
    Conserved Domains (1) summary
    pfam02365
    Location:65 → 90
    NAM; No apical meristem (NAM) protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SV87.1

Gene LinkOut

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