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transmembrane protein, putative (DUF239) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826612, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane protein, putative (DUF239)
Primary source
TAIR:AT4G10210
Locus tag
AT4G10210
See related
Araport:AT4G10210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F24G24.10; F24G24_10
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Sequence:
Chromosome: 4; NC_003075.7 (6357052..6360377)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene TTF-type zinc finger protein with HAT dimerization domain-containing protein Neighboring gene miscRNA Neighboring gene NEP-interacting protein, putative (DUF239) Neighboring gene no-apical-meristem-associated carboxy-terminal domain protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_117089.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transmembrane protein, putative (DUF239)
NP_192759.2
  • Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT4G10220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6357052..6360377
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117089.3 → NP_192759.2  transmembrane protein, putative (DUF239) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192759.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JLL3, Q9SV95
    Conserved Domains (2) summary
    pfam03080
    Location:194 → 385
    DUF239; Domain of unknown function (DUF239)
    pfam14365
    Location:62 → 178
    DUF4409; Domain of unknown function (DUF4409)
Nucleotide Protein
Heading Accession and Version

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