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ELP6 elongator protein 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826600, updated on 18-Sep-2024

Summary

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Official Symbol
ELP6
Official Full Name
elongator protein 6
Primary source
TAIR:AT4G10090
Locus tag
AT4G10090
See related
Araport:AT4G10090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
elongator protein 6; F28M11.10; F28M11_10
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Genomic context

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See ELP6 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (6305320..6307552)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Beta-glucosidase, GBA2 type family protein Neighboring gene KH domain-containing protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene co-factor for nitrate, reductase and xanthine dehydrogenase 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Meta-regulation of Arabidopsis auxin responses depends on tRNA maturation. Leitner J, et al. Cell Rep, 2015 Apr 28. PMID 25892242, Free PMC Article
  2. MODULATOR OF PIN genes control steady-state levels of Arabidopsis PIN proteins. Malenica N, et al. Plant J, 2007 Aug. PMID 17651372
  3. Evolutionary Conservation in Protein-Protein Interactions and Structures of the Elongator Sub-Complex ELP456 from Arabidopsis and Yeast. Jun SE, et al. Int J Mol Sci, 2024 Apr 15. PMID 38673955, Free PMC Article
  4. Elongator mediates ABA responses, oxidative stress resistance and anthocyanin biosynthesis in Arabidopsis. Zhou X, et al. Plant J, 2009 Oct. PMID 19500300
  5. Plant Elongator regulates auxin-related genes during RNA polymerase II transcription elongation. Nelissen H, et al. Proc Natl Acad Sci U S A, 2010 Jan 26. PMID 20080602, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Arabidopsis Elongator post-transcriptionally modulates PIN protein levels.
    Title: Meta-regulation of Arabidopsis auxin responses depends on tRNA maturation.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_117077.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within auxin polar transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of anthocyanin metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of cell population proliferation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of leaf development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to oxidative stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within root morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within shoot system morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of elongator holoenzyme complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
elongator protein 6
NP_567351.1
  • elongator protein 6 (ELP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2348 (InterPro:IPR018627); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6305320..6307552
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117077.4 → NP_567351.1  elongator protein 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567351.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z343, Q8L9Y2, Q9SN32
    UniProtKB/TrEMBL
    A0A178V2M9, A0A5S9XSP7, A0A654FMY2, A0A7G2EYM8
    Conserved Domains (1) summary
    cd19495
    Location:27 → 258
    Elp6; Elongator subcomplex subunit Elp6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L9Y2.1

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