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mediator of RNA polymerase II transcription subunit, putative (DUF3511) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826579, updated on 18-Sep-2024

Summary

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Official Full Name
mediator of RNA polymerase II transcription subunit, putative (DUF3511)
Primary source
TAIR:AT4G09890
Locus tag
AT4G09890
See related
Araport:AT4G09890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T5L19.20; T5L19_20
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (6218319..6218989)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene methyl esterase 12 Neighboring gene FBD, F-box and Leucine Rich Repeat domains containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_117057.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit, putative (DUF3511)
NP_192727.1
  • Protein of unknown function (DUF3511); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3511 (InterPro:IPR021899); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3511) (TAIR:AT5G11970.1); Has 187 Blast hits to 187 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 187; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6218319..6218989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117057.4 → NP_192727.1  mediator of RNA polymerase II transcription subunit, putative (DUF3511) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192727.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V4C7, Q9T0E8
    Conserved Domains (1) summary
    pfam12023
    Location:39 → 77
    DUF3511; Domain of unknown function (DUF3511)
Nucleotide Protein
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