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SNARE associated Golgi protein family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826542, updated on 18-Sep-2024

Summary

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Official Full Name
SNARE associated Golgi protein family
Primary source
TAIR:AT4G09580
Locus tag
AT4G09580
See related
Araport:AT4G09580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T25P22.20; T25P22_20
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (6052352..6054454, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Protease-associated (PA) RING/U-box zinc finger family protein Neighboring gene pseudo Neighboring gene calcium-dependent protein kinase 4 Neighboring gene miscRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_117026.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum HDA PubMed 

General protein information

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Preferred Names
SNARE associated Golgi protein family
NP_192696.3
  • SNARE associated Golgi protein family; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT1G71940.1); Has 2802 Blast hits to 2802 proteins in 773 species: Archae - 6; Bacteria - 1625; Metazoa - 227; Fungi - 38; Plants - 230; Viruses - 0; Other Eukaryotes - 676 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6052352..6054454 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117026.5 → NP_192696.3  SNARE associated Golgi protein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192696.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L586, Q9SST4
    UniProtKB/TrEMBL
    A0A178V5D8, A0A5S9XR18, A0A654FMM3
    Conserved Domains (1) summary
    cl00429
    Location:104 → 284
    SNARE_assoc; SNARE associated Golgi protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L586.1

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