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TATA-binding related factor (TRF) of subunit 20 of Mediator complex [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826485, updated on 18-Sep-2024

Summary

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Official Full Name
TATA-binding related factor (TRF) of subunit 20 of Mediator complex
Primary source
TAIR:AT4G09070
Locus tag
AT4G09070
See related
Araport:AT4G09070
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F23J3.100; F23J3_100
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (5802308..5803392)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Outer membrane OMP85 family protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TATA-binding related factor (TRF) of subunit 20 of Mediator complex
NP_192646.1
  • TATA-binding related factor (TRF) of subunit 20 of Mediator complex; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med20 (InterPro:IPR013921); BEST Arabidopsis thaliana protein match is: TATA-binding related factor (TRF) of subunit 20 of Mediator complex (TAIR:AT2G28230.1); Has 80 Blast hits to 80 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    5802308..5803392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116976.1 → NP_192646.1  TATA-binding related factor (TRF) of subunit 20 of Mediator complex [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192646.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M0S0
    UniProtKB/TrEMBL
    A0A5S9XQP1, A0A654FMJ3, A0A7G2EWS0
    Conserved Domains (1) summary
    pfam08612
    Location:1 → 208
    Med20; TATA-binding related factor (TRF) of subunit 20 of Mediator complex
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M0S0.1

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