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PUM11 pumilio 11 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826455, updated on 18-Sep-2024

Summary

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Official Symbol
PUM11
Official Full Name
pumilio 11
Primary source
TAIR:AT4G08840
Locus tag
AT4G08840
See related
Araport:AT4G08840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
APUM11; pumilio 11; T32A17.150; T32A17_150
Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
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Genomic context

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See PUM11 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (5631298..5633779)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene Leucine-rich repeat receptor-like protein kinase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Markers

  • At4g08840_Arabidopsis_lyrata_ssp._lyrata_CAN10 (e-PCR)
  • At4g08840_Arabidopsis_lyrata_ssp._petraea_GER5 (e-PCR)

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
pumilio 11
NP_192624.2
  • pumilio 11 (PUM11); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 9 (TAIR:AT1G35730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    5631298..5633779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116954.2 → NP_192624.2  pumilio 11 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192624.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LDW3
    UniProtKB/TrEMBL
    A0A654FMG6
    Conserved Domains (1) summary
    cd07920
    Location:237 → 551
    Pumilio; Pumilio-family RNA binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LDW3.2

Gene LinkOut

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