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helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826439, updated on 18-Sep-2024

Summary

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Official Full Name
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein
Primary source
TAIR:AT4G01020
Locus tag
AT4G01020
See related
Araport:AT4G01020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F3I3.40; F3I3_40
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (438991..445218)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Transcription factor jumonji (jmjC) domain-containing protein Neighboring gene Ubiquitin-like superfamily protein Neighboring gene cyclic nucleotide-gated channel 13 Neighboring gene RING/U-box superfamily protein Neighboring gene ncRNA Neighboring gene PYR1-like 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_116330.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein
NP_567206.1
  • helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related; FUNCTIONS IN: in 6 functions; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type, conserved site (InterPro:IPR017907), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), K Homology (InterPro:IPR004087), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, C2H2-type (InterPro:IPR007087), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (TAIR:AT5G10370.1); Has 13197 Blast hits to 12409 proteins in 1676 species: Archae - 4; Bacteria - 3384; Metazoa - 3503; Fungi - 1989; Plants - 1444; Viruses - 760; Other Eukaryotes - 2113 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    438991..445218
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116330.3 → NP_567206.1  helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567206.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0CE10, Q9SV27
    UniProtKB/TrEMBL
    A0A5S9XQM0
    Conserved Domains (8) summary
    smart00487
    Location:302 → 484
    DEXDc; DEAD-like helicases superfamily
    smart00647
    Location:1625 → 1693
    IBR; In Between Ring fingers
    smart00847
    Location:700 → 789
    HA2; Helicase associated domain (HA2) Add an annotation
    cd00046
    Location:320 → 458
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00162
    Location:1560 → 1588
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam00271
    Location:507 → 631
    Helicase_C; Helicase conserved C-terminal domain
    pfam01485
    Location:1694 → 1748
    IBR; IBR domain, a half RING-finger domain
    pfam07717
    Location:834 → 937
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0CE10.1

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