U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PUM15 pumilio 15 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826417, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
PUM15
Official Full Name
pumilio 15
Primary source
TAIR:AT4G08560
Locus tag
AT4G08560
See related
Araport:AT4G08560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
APUM15; pumilio 15; T15F16.9; T15F16_9
Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PUM15 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (5450434..5453183)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene electron carrier/ protein disulfide oxidoreductase Neighboring gene uncharacterized protein Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene microfibrillar-associated protein-like protein Neighboring gene ORTHRUS-like protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
pumilio 15
NP_192596.1
  • pumilio 15 (PUM15); FUNCTIONS IN: RNA binding, binding; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Plant self-incompatibility S1 (InterPro:IPR010264), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 13 (TAIR:AT5G43090.1); Has 2363 Blast hits to 1592 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 534; Fungi - 743; Plants - 651; Viruses - 0; Other Eukaryotes - 435 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    5450434..5453183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116925.1 → NP_192596.1  pumilio 15 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192596.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0DN94
    Conserved Domains (2) summary
    cd07920
    Location:138 → 464
    Pumilio; Pumilio-family RNA binding domain
    pfam05938
    Location:23 → 92
    Self-incomp_S1; Plant self-incompatibility protein S1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.