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LOC8261198 ultraviolet-B receptor UVR8 [ Ricinus communis (castor bean) ]

Gene ID: 8261198, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8261198
Gene description
ultraviolet-B receptor UVR8
Locus tag
RCOM_1727260
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8261198 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 5 NC_063260.1 (16759935..16764847)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994315.1 (612421..617371, complement)

Chromosome 5 - NC_063260.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein DDB_G0275933 Neighboring gene 14-3-3-like protein A Neighboring gene membrane protein PM19L Neighboring gene RHOMBOID-like protein 9, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ultraviolet-B receptor UVR8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063260.1 Reference ASM1957865v1

    Range
    16759935..16764847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025156933.2 → XP_025012701.1  ultraviolet-B receptor UVR8 isoform X2

    Conserved Domains (1) summary
    cl27697
    Location:6 → 326
    RCC1; Regulator of chromosome condensation (RCC1) repeat

  2. XM_002516699.4 → XP_002516745.1  ultraviolet-B receptor UVR8 isoform X1

    See identical proteins and their annotated locations for XP_002516745.1

    UniProtKB/TrEMBL
    B9RSM6
    Conserved Domains (2) summary
    pfam00415
    Location:215 → 264
    RCC1; Regulator of chromosome condensation (RCC1) repeat
    pfam13540
    Location:199 → 228
    RCC1_2; Regulator of chromosome condensation (RCC1) repeat
Nucleotide Protein
Heading Accession and Version

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