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Zinc knuckle (CCHC-type) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825884, updated on 18-Sep-2024

Summary

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Official Full Name
Zinc knuckle (CCHC-type) family protein
Primary source
TAIR:AT4G05360
Locus tag
AT4G05360
See related
Araport:AT4G05360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
C6L9.40; C6L9_40
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Genomic context

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Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (2728204..2732337)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene RING/U-box superfamily protein Neighboring gene ncRNA Neighboring gene P-loop nucleoside triphosphate hydrolase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_116775.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of cohesin complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Zinc knuckle (CCHC-type) family protein
NP_192445.1
  • Zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: nuclear chromosome; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: Rad21/Rec8-like family protein (TAIR:AT3G59550.1); Has 149 Blast hits to 143 proteins in 40 species: Archae - 0; Bacteria - 8; Metazoa - 14; Fungi - 18; Plants - 86; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    2728204..2732337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116775.1 → NP_192445.1  Zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192445.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UTN7, Q9M0V9
    Conserved Domains (1) summary
    pfam04824
    Location:294 → 316
    Rad21_Rec8; Conserved region of Rad21 / Rec8 like protein
Nucleotide Protein
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