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AGD13 ARF-GAP domain 13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825881, updated on 18-Sep-2024

Summary

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Official Symbol
AGD13
Official Full Name
ARF-GAP domain 13
Primary source
TAIR:AT4G05330
Locus tag
AT4G05330
See related
Araport:AT4G05330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARF-GAP domain 13; C6L9.10; C6L9_10
Summary
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
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Genomic context

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See AGD13 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (2720493..2723214, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ubiquitin-like superfamily protein Neighboring gene polyubiquitin 10 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Wide-scale screening of T-DNA lines for transcription factor genes affecting male gametophyte development in Arabidopsis. Reňák D, et al. Sex Plant Reprod, 2012 Mar. PMID 22101548
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001340549.1
NM_116772.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within pollen development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ARF-GAP domain 13
NP_567292.1
  • ARF-GAP domain 13 (AGD13); FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent ARF-type GTPase activating protein family (TAIR:AT4G21160.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    2720493..2723214 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340548.1 → NP_001328043.1  ARF-GAP domain 13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B3F7, A0A5S9XQH6

  2. NM_116772.4 → NP_567292.1  ARF-GAP domain 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567292.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LFN9, Q9M0W2
    UniProtKB/TrEMBL
    A0A178V602, A0A5S9XQH6
    Conserved Domains (2) summary
    cd04038
    Location:179 → 323
    C2_ArfGAP; C2 domain present in Arf GTPase Activating Proteins (GAP)
    cd08204
    Location:18 → 124
    ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)

  3. NM_001340549.1 → NP_001328044.1  ARF-GAP domain 13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LFN9, Q9M0W2
    UniProtKB/TrEMBL
    A0A178V602, A0A5S9XQH6
    Conserved Domains (2) summary
    cd04038
    Location:179 → 323
    C2_ArfGAP; C2 domain present in Arf GTPase Activating Proteins (GAP)
    cd08204
    Location:18 → 124
    ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LFN9.1

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