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UBQ10 polyubiquitin 10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825880, updated on 18-Sep-2024

Summary

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Official Symbol
UBQ10
Official Full Name
polyubiquitin 10
Primary source
TAIR:AT4G05320
Locus tag
AT4G05320
See related
Araport:AT4G05320
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
C17L7.240; C17L7_240; polyubiquitin 10; UBI10; ubiquitin 10
Summary
One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.
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Genomic context

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See UBQ10 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (2717977..2720308)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Ubiquitin-like superfamily protein Neighboring gene ARF-GAP domain 13 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The effect of intron location on intron-mediated enhancement of gene expression in Arabidopsis. Rose AB. Plant J, 2004 Dec. PMID 15546357
  2. Lysine Residues Are Not Required for Proteasome-Mediated Proteolysis of the Auxin/Indole Acidic Acid Protein IAA1. Gilkerson J, et al. Plant Physiol, 2015 Jun. PMID 25888615, Free PMC Article
  3. E3-independent ubiquitination of AtMAPR/MSBP1. Kao AL, et al. Phytochemistry, 2012 Jun. PMID 22513011
  4. Modulation of phototropic responsiveness in Arabidopsis through ubiquitination of phototropin 1 by the CUL3-Ring E3 ubiquitin ligase CRL3(NPH3). Roberts D, et al. Plant Cell, 2011 Oct. PMID 21990941, Free PMC Article
  5. Auxin-induced, SCF(TIR1)-mediated poly-ubiquitination marks AUX/IAA proteins for degradation. Maraschin Fdos S, et al. Plant J, 2009 Jul. PMID 19309453

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The effect of intron location on mRNA accumulation in transgenic plants was found to decline with distance from the promoter.
    Title: The effect of intron location on intron-mediated enhancement of gene expression in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084884.5
NM_001340546.1
NM_001340547.1
NM_116771.5
NM_178968.5
NM_178969.6
NM_178970.5
NM_202787.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within response to salicylic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
polyubiquitin 10
NP_001078353.4
  • polyubiquitin 10 (UBQ10); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 32669 Blast hits to 7219 proteins in 726 species: Archae - 0; Bacteria - 99; Metazoa - 15287; Fungi - 3767; Plants - 6623; Viruses - 815; Other Eukaryotes - 6078 (source: NCBI BLink).
NP_567291.4
  • polyubiquitin 10 (UBQ10); INVOLVED IN: protein modification process, aging, response to salicylic acid stimulus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 32669 Blast hits to 7219 proteins in 726 species: Archae - 0; Bacteria - 99; Metazoa - 15287; Fungi - 3767; Plants - 6623; Viruses - 815; Other Eukaryotes - 6078 (source: NCBI BLink).
NP_849299.4
  • polyubiquitin 10 (UBQ10); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 39163 Blast hits to 7228 proteins in 725 species: Archae - 0; Bacteria - 126; Metazoa - 18170; Fungi - 4568; Plants - 8003; Viruses - 978; Other Eukaryotes - 7318 (source: NCBI BLink).
NP_849300.4
  • polyubiquitin 10 (UBQ10); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 32669 Blast hits to 7219 proteins in 726 species: Archae - 0; Bacteria - 99; Metazoa - 15287; Fungi - 3767; Plants - 6623; Viruses - 815; Other Eukaryotes - 6078 (source: NCBI BLink).
NP_849301.4
  • polyubiquitin 10 (UBQ10); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 39163 Blast hits to 7228 proteins in 725 species: Archae - 0; Bacteria - 126; Metazoa - 18170; Fungi - 4568; Plants - 8003; Viruses - 978; Other Eukaryotes - 7318 (source: NCBI BLink).
NP_974516.4
  • polyubiquitin 10 (UBQ10); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin family protein (TAIR:AT4G02890.4); Has 26633 Blast hits to 7217 proteins in 726 species: Archae - 0; Bacteria - 80; Metazoa - 12516; Fungi - 3023; Plants - 5428; Viruses - 651; Other Eukaryotes - 4935 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    2717977..2720308
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_178968.5 → NP_849299.4  polyubiquitin 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849299.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8H159
    UniProtKB/TrEMBL
    A0A178V0T6, A0A5S9XPR1, Q9SAQ6
    Conserved Domains (1) summary
    cd01803
    Location:77 → 152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

  2. NM_001084884.5 → NP_001078353.4  polyubiquitin 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078353.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V185, Q3EAA5, Q3EAA6, Q7EUR6, Q93ZJ0
    Conserved Domains (1) summary
    cd01803
    Location:77 → 152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

  3. NM_001340546.1 → NP_001328999.1  polyubiquitin 10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JGM3, Q8LDD7
    Conserved Domains (1) summary
    cd01803
    Location:77 → 152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

  4. NM_116771.5 → NP_567291.4  polyubiquitin 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567291.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V185, Q3EAA5, Q3EAA6, Q7EUR6, Q93ZJ0
    Conserved Domains (1) summary
    cd01803
    Location:77 → 152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

  5. NM_202787.4 → NP_974516.4  polyubiquitin 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974516.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DFN7, Q3E7T8
    UniProtKB/TrEMBL
    A0A178V886, A0A384KF74, J7FN14, O49976
    Conserved Domains (1) summary
    cd01803
    Location:77 → 152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

  6. NM_001340547.1 → NP_001328998.1  polyubiquitin 10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DFN7, Q3E7T8
    UniProtKB/TrEMBL
    A0A178V886, A0A384KF74, J7FN14, O49976
    Conserved Domains (1) summary
    cd01803
    Location:77 → 152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

  7. NM_178969.6 → NP_849300.4  polyubiquitin 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849300.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V185, Q3EAA5, Q3EAA6, Q7EUR6, Q93ZJ0
    Conserved Domains (1) summary
    cd01803
    Location:77 → 152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin

  8. NM_178970.5 → NP_849301.4  polyubiquitin 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849301.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8H159
    UniProtKB/TrEMBL
    A0A178V0T6, A0A5S9XPR1, Q9SAQ6
    Conserved Domains (1) summary
    cd01803
    Location:77 → 152
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3E7T8.2
Q8H159.2

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Research Materials