U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC8258161 zinc finger protein BRUTUS-like At1g18910 [ Ricinus communis (castor bean) ]

Gene ID: 8258161, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC8258161
Gene description
zinc finger protein BRUTUS-like At1g18910
Locus tag
RCOM_1513200
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC8258161 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 4 NC_063259.1 (25980775..25989116, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994278.1 (4216867..4225278)

Chromosome 4 - NC_063259.1Genomic Context describing neighboring genes Neighboring gene secreted RxLR effector protein 161-like Neighboring gene LOB domain-containing protein 27 Neighboring gene protein NUCLEAR FUSION DEFECTIVE 4 Neighboring gene protein NUCLEAR FUSION DEFECTIVE 4

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc finger protein BRUTUS-like At1g18910

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063259.1 Reference ASM1957865v1

    Range
    25980775..25989116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002511455.4 → XP_002511501.1  zinc finger protein BRUTUS-like At1g18910

    See identical proteins and their annotated locations for XP_002511501.1

    UniProtKB/TrEMBL
    B9R926
    Conserved Domains (4) summary
    cd12108
    Location:43 → 174
    Hr-like; Hemerythrin-like domain
    pfam05495
    Location:1033 → 1109
    zf-CHY; CHY zinc finger
    pfam13639
    Location:1160 → 1203
    zf-RING_2; Ring finger domain
    pfam14599
    Location:1208 → 1266
    zinc_ribbon_6; Zinc-ribbon
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials