WRKY42 WRKY family transcription factor [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: WRKY42
Official Full Name: WRKY family transcription factor
Primary source: TAIR:AT4G04450
Locus tag: AT4G04450
See related: Araport:AT4G04450
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AtWRKY42; T26N6.6; T26N6_6
Summary: member of WRKY Transcription Factor; Group II-b
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Genomic context

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See WRKY42 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 6

Sequence:: Chromosome: 4; NC_003075.7 (2218042..2221260)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Genome-wide association study reveals WRKY42 as a novel plant transcription factor that influences oviposition preference of Pieris butterflies.
Title: Genome-wide association study reveals WRKY42 as a novel plant transcription factor that influences oviposition preference of Pieris butterflies.
The lncRNA APOLO interacts with the transcription factor WRKY42 to trigger root hair cell expansion in response to cold.
Title: The lncRNA APOLO interacts with the transcription factor WRKY42 to trigger root hair cell expansion in response to cold.
WRKY42 transcription factor positively regulates leaf senescence through modulating SA and ROS synthesis in Arabidopsis thaliana.
Title: WRKY42 transcription factor positively regulates leaf senescence through modulating SA and ROS synthesis in Arabidopsis thaliana.
AtWRKY42 modulated Pi homeostasis by regulating the expression of PHO1 and PHT1;1 to adapt to environmental changes in inorganic phosphate (Pi) availability.
Title: WRKY42 modulates phosphate homeostasis through regulating phosphate translocation and acquisition in Arabidopsis.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001340482.1

Supported by ESTs:

NM_116683.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA binding	IDA Inferred from Direct Assay more info	PubMed
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info
enables transcription cis-regulatory region binding	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within negative regulation of DNA-templated transcription	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of leaf senescence	IDA Inferred from Direct Assay more info	PubMed
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: WRKY family transcription factor

NP_192354.1

WRKY42; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 31 (TAIR:AT4G22070.1); Has 3599 Blast hits to 3152 proteins in 220 species: Archae - 0; Bacteria - 6; Metazoa - 41; Fungi - 2; Plants - 3474; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

2218042..2221260

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_116683.3 → NP_192354.1 WRKY family transcription factor [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_192354.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9XEC3

UniProtKB/TrEMBL

A0A178UY78, A0A5S9XQ94, A0MF52, Q1PEB9

Conserved Domains (1) summary

smart00774
Location:291 → 349

WRKY; DNA binding domain
NM_001340482.1 → NP_001328851.1 WRKY family transcription factor [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UY78, A0A1P8B5W9, A0A5S9XQ94