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transmembrane protein, putative (DUF3537) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825687, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane protein, putative (DUF3537)
Primary source
TAIR:AT4G03820
Locus tag
AT4G03820
See related
Araport:AT4G03820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T7M24.8; T7M24_8
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (1771833..1774532, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001340470.1
NM_001340471.1
NM_116620.4
NM_202778.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transmembrane protein, putative (DUF3537)
NP_192291.2
  • Protein of unknown function (DUF3537); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT4G22270.1); Has 140 Blast hits to 140 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
NP_974507.1
  • Protein of unknown function (DUF3537); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT4G22270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    1771833..1774532 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202778.2 → NP_974507.1  transmembrane protein, putative (DUF3537) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974507.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JGB3, Q8GZ69
    Conserved Domains (1) summary
    pfam12056
    Location:31 → 418
    DUF3537; Protein of unknown function (DUF3537)

  2. NM_001340470.1 → NP_001328063.1  transmembrane protein, putative (DUF3537) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B3H6, Q8GZ69

  3. NM_001340471.1 → NP_001328064.1  transmembrane protein, putative (DUF3537) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B3G3, Q8GZ69

  4. NM_116620.4 → NP_192291.2  transmembrane protein, putative (DUF3537) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192291.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3LF52, Q8GZ69
    Conserved Domains (1) summary
    pfam12056
    Location:31 → 418
    DUF3537; Protein of unknown function (DUF3537)
Nucleotide Protein
Heading Accession and Version

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