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transducin family protein / WD-40 repeat family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825521, updated on 18-Sep-2024

Summary

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Official Full Name
transducin family protein / WD-40 repeat family protein
Primary source
TAIR:AT3G63460
Locus tag
AT3G63460
See related
Araport:AT3G63460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
SEC31B
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Genomic context

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Location:
chromosome: 3
Exon count:
22
Sequence:
Chromosome: 3; NC_003074.8 (23430623..23437374, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cytokinin oxidase/dehydrogenase 6 Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene serine carboxypeptidase-like 40 Neighboring gene ncRNA Neighboring gene ATP binding microtubule motor family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. COPII genes SEC31A/B are essential for gametogenesis and interchangeable in pollen development in Arabidopsis.
    Title: COPII genes SEC31A/B are essential for gametogenesis and interchangeable in pollen development in Arabidopsis.
  2. AtSEC31B plays a vital role in pollen wall development by regulating the secretory pathway of the tapetal cells.
    Title: Secretory COPII Protein SEC31B Is Required for Pollen Wall Development.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NM_001203242.1
NM_116211.3
NM_180693.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
transducin family protein / WD-40 repeat family protein
NP_001190171.1
  • transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1).
NP_191905.3
  • transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1); Has 36280 Blast hits to 25623 proteins in 1259 species: Archae - 42; Bacteria - 4996; Metazoa - 13160; Fungi - 7289; Plants - 4519; Viruses - 551; Other Eukaryotes - 5723 (source: NCBI BLink).
NP_851024.1
  • transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1); Has 36264 Blast hits to 25632 proteins in 1258 species: Archae - 42; Bacteria - 5004; Metazoa - 13161; Fungi - 7258; Plants - 4512; Viruses - 551; Other Eukaryotes - 5736 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    23430623..23437374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180693.2 → NP_851024.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851024.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L611, Q9LY69
    UniProtKB/TrEMBL
    A0A178VFW0, A0A5S9XND4
    Conserved Domains (7) summary
    COG2319
    Location:32 → 337
    WD40; WD40 repeat [General function prediction only]
    pfam08226
    Location:797 → 871
    DUF1720; Domain of unknown function (DUF1720)
    pfam14179
    Location:812 → 889
    YppG; YppG-like protein
    sd00039
    Location:10 → 63
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:86 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl14807
    Location:568 → 784
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl23782
    Location:843 → 944
    RCR; Chitin synthesis regulation, resistance to Congo red

  2. NM_001203242.1 → NP_001190171.1  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190171.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFW0, A0A5S9XND4, F4J110
    Conserved Domains (7) summary
    COG2319
    Location:32 → 337
    WD40; WD40 repeat [General function prediction only]
    pfam08226
    Location:787 → 861
    DUF1720; Domain of unknown function (DUF1720)
    pfam14179
    Location:802 → 879
    YppG; YppG-like protein
    sd00039
    Location:10 → 63
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:86 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl14807
    Location:558 → 774
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl23782
    Location:833 → 934
    RCR; Chitin synthesis regulation, resistance to Congo red

  3. NM_116211.3 → NP_191905.3  transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191905.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFW0, A0A5S9XND4, F4J109
    Conserved Domains (7) summary
    COG2319
    Location:32 → 337
    WD40; WD40 repeat [General function prediction only]
    pfam08226
    Location:795 → 869
    DUF1720; Domain of unknown function (DUF1720)
    pfam14179
    Location:810 → 887
    YppG; YppG-like protein
    sd00039
    Location:10 → 63
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:86 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl14807
    Location:566 → 782
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl23782
    Location:841 → 942
    RCR; Chitin synthesis regulation, resistance to Congo red
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L611.1

Gene LinkOut

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