U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TRM5 zinc finger CCCH domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825518, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
TRM5
Official Full Name
zinc finger CCCH domain protein
Primary source
TAIR:AT3G63430
Locus tag
AT3G63430
See related
Araport:AT3G63430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
TON1 Recruiting Motif 5
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TRM5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (23420145..23422475)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Ggamma-subunit 1 Neighboring gene ncRNA Neighboring gene cytokinin oxidase/dehydrogenase 6 Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Arabidopsis TRM5 encodes a nuclear-localised bifunctional tRNA guanine and inosine-N1-methyltransferase that is important for growth. Guo Q, et al. PLoS One, 2019. PMID 31756231, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AtTRM5 is localized to the nucleus in plant cells.
    Title: Arabidopsis TRM5 encodes a nuclear-localised bifunctional tRNA guanine and inosine-N1-methyltransferase that is important for growth.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help
NM_116208.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in regulation of monopolar cell growth IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
zinc finger CCCH domain protein
NP_191902.1
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 135 Blast hits to 119 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 3; Plants - 119; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    23420145..23422475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340214.1 → NP_001325882.1  zinc finger CCCH domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VBN2, A0A1I9LMK3, A0A5S9XP68

  2. NM_116208.4 → NP_191902.1  zinc finger CCCH domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191902.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VBN2, A0A5S9XP68, Q9LY72
    Conserved Domains (1) summary
    pfam14309
    Location:384 → 520
    DUF4378; Domain of unknown function (DUF4378)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools