U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Cysteine proteinases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825469, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Cysteine proteinases superfamily protein
Primary source
TAIR:AT3G62940
Locus tag
AT3G62940
See related
Araport:AT3G62940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
OTU5; ovarian tumor domain (OTU)-containing DUB (deubiquitilating enzyme) 5
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (23262795..23264731, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene zinc metalloproteinase aureolysin Neighboring gene Thioredoxin superfamily protein Neighboring gene Thioredoxin superfamily protein Neighboring gene Thioredoxin superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Epigenomic regulation of OTU5 in Arabidopsis thaliana. Hsieh JA, et al. Genomics, 2020 Sep. PMID 32298708
  2. The Deubiquitinase OTU5 Regulates Root Responses to Phosphate Starvation. Suen DF, et al. Plant Physiol, 2018 Mar. PMID 29301952, Free PMC Article
  3. Deubiquitinating Enzyme OTU5 Contributes to DNA Methylation Patterns and Is Critical for Phosphate Nutrition Signals. Yen MR, et al. Plant Physiol, 2017 Dec. PMID 29061907, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_001203236.2
NM_001340185.1
NM_001340186.1
NM_116159.4
NM_180408.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Cysteine proteinases superfamily protein
NP_001190165.1
  • Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1).
NP_191853.1
  • Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1); Has 5815 Blast hits to 4395 proteins in 552 species: Archae - 16; Bacteria - 640; Metazoa - 1732; Fungi - 585; Plants - 331; Viruses - 22; Other Eukaryotes - 2489 (source: NCBI BLink).
NP_850739.1
  • Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1); Has 4424 Blast hits to 3467 proteins in 474 species: Archae - 10; Bacteria - 494; Metazoa - 1270; Fungi - 452; Plants - 292; Viruses - 20; Other Eukaryotes - 1886 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    23262795..23264731 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180408.3 → NP_850739.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850739.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A384K877, A0A5S9XN83
    Conserved Domains (2) summary
    COG5539
    Location:4 → 307
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
    pfam02338
    Location:171 → 305
    OTU; OTU-like cysteine protease

  2. NM_116159.4 → NP_191853.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191853.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VEN6, A0A178VGH0, B9DF87, Q8W457, Q9LYC7
    UniProtKB/TrEMBL
    A0A384LMN3, A0A5S9XN83
    Conserved Domains (2) summary
    COG5539
    Location:20 → 323
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
    pfam02338
    Location:187 → 321
    OTU; OTU-like cysteine protease

  3. NM_001203236.2 → NP_001190165.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190165.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VEN6, A0A178VGH0, B9DF87, Q8W457, Q9LYC7
    UniProtKB/TrEMBL
    A0A384LMN3, A0A5S9XN83
    Conserved Domains (2) summary
    COG5539
    Location:20 → 323
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
    pfam02338
    Location:187 → 321
    OTU; OTU-like cysteine protease

  4. NM_001340185.1 → NP_001325820.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VEN6, A0A178VGH0, B9DF87, Q8W457, Q9LYC7
    UniProtKB/TrEMBL
    A0A384LMN3, A0A5S9XN83
    Conserved Domains (2) summary
    COG5539
    Location:20 → 323
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
    pfam02338
    Location:187 → 321
    OTU; OTU-like cysteine protease

  5. NM_001340186.1 → NP_001325819.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A384K877, A0A5S9XN83
    Conserved Domains (2) summary
    COG5539
    Location:4 → 307
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
    pfam02338
    Location:171 → 305
    OTU; OTU-like cysteine protease
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LYC7.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools