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Putative endonuclease or glycosyl hydrolase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825420, updated on 18-Sep-2024

Summary

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Official Full Name
Putative endonuclease or glycosyl hydrolase
Primary source
TAIR:AT3G62460
Locus tag
AT3G62460
See related
Araport:AT3G62460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (23104665..23105650, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DNA mismatch repair protein Neighboring gene pseudo Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_116111.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA nuclease activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion HDA PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Putative endonuclease or glycosyl hydrolase
NP_191805.1
  • Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62210.1); Has 141 Blast hits to 133 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    23104665..23105650 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116111.4 → NP_191805.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191805.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VME9, A0A384KNX8, A0A5S9XN17, A0A654FK25, Q9LZP4
    Conserved Domains (1) summary
    cd10910
    Location:58 → 168
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
Nucleotide Protein
Heading Accession and Version

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