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SAF1 F-box/RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825417, updated on 18-Sep-2024

Summary

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Official Symbol
SAF1
Official Full Name
F-box/RNI-like superfamily protein
Primary source
TAIR:AT3G62440
Locus tag
AT3G62440
See related
Araport:AT3G62440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
secondary wall thickening-associated F-box 1
Summary
Encodes an F-box protein which is predominantly expressed in flower tissues and interacts with ASK19 protein. Mutations in this gene suggest it acts as a negative regulator of endothecial secondary wall thickening in anthers.
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Genomic context

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See SAF1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (23096104..23097726, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene basic region/leucine zipper motif 53 Neighboring gene Protein with RNI-like/FBD-like domain Neighboring gene DNA mismatch repair protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel F-box protein represses endothecial secondary wall thickening for anther dehiscence in Arabidopsis thaliana. Kim YY, et al. J Plant Physiol, 2012 Jan 15. PMID 22018967
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_116109.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within anther dehiscence IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
F-box/RNI-like superfamily protein
NP_191803.1
  • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G15620.1); Has 1659 Blast hits to 1619 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1657; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    23096104..23097726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116109.1 → NP_191803.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191803.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LZP6
    UniProtKB/TrEMBL
    A0A178VA18
    Conserved Domains (3) summary
    smart00579
    Location:385 → 455
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:146 → 166
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:2 → 42
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LZP6.1

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