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HCO3- transporter family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825400, updated on 18-Sep-2024

Summary

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Official Full Name
HCO3- transporter family
Primary source
TAIR:AT3G62270
Locus tag
AT3G62270
See related
Araport:AT3G62270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
BOR2; REQUIRES HIGH BORON 2
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Genomic context

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Location:
chromosome: 3
Exon count:
12
Sequence:
Chromosome: 3; NC_003074.8 (23042212..23046153, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ubiquitin 5 Neighboring gene Protein phosphatase 2C family protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene tRNA-Phe

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Roles of BOR2, a boron exporter, in cross linking of rhamnogalacturonan II and root elongation under boron limitation in Arabidopsis. Miwa K, et al. Plant Physiol, 2013 Dec. PMID 24114060, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_116092.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables active borate transmembrane transporter activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables solute:inorganic anion antiporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in monoatomic anion transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within root development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
HCO3- transporter family
NP_191786.1
  • HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT2G47160.1); Has 2572 Blast hits to 1412 proteins in 199 species: Archae - 0; Bacteria - 14; Metazoa - 1904; Fungi - 316; Plants - 231; Viruses - 2; Other Eukaryotes - 105 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    23042212..23046153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116092.4 → NP_191786.1  HCO3- transporter family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191786.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M1P7
    UniProtKB/TrEMBL
    A0A178V7D2, A0A5S9XMZ7, A0A654FK07
    Conserved Domains (1) summary
    cl23746
    Location:2 → 549
    Xan_ur_permease; Permease family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M1P7.1

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