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NEFA-interacting nuclear protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825387, updated on 18-Sep-2024

Summary

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Official Full Name
NEFA-interacting nuclear protein
Primary source
TAIR:AT3G62140
Locus tag
AT3G62140
See related
Araport:AT3G62140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (23007083..23008749)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Class II aaRS and biotin synthetases superfamily protein Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene P-glycoprotein 21 Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene VANGUARD-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_116079.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
NEFA-interacting nuclear protein
NP_191773.2
  • CONTAINS InterPro DOMAIN/s: NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR019331); Has 398 Blast hits to 395 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    23007083..23008749
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116079.2 → NP_191773.2  NEFA-interacting nuclear protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191773.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VB02, A0A384K8N1, A0A5S9XMY8, Q5XV94
    Conserved Domains (1) summary
    pfam10187
    Location:14 → 102
    Nefa_Nip30_N; N-terminal domain of NEFA-interacting nuclear protein NIP30
Nucleotide Protein
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