U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LCD Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825386, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
LCD
Official Full Name
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Primary source
TAIR:AT3G62130
Locus tag
AT3G62130
See related
Araport:AT3G62130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtLCD; L-cysteine desulfhydrase
Summary
Encodes an enzyme that decomposes L-cysteine into pyruvate, H2S, and NH3.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LCD in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (23004788..23007006)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Class II aaRS and biotin synthetases superfamily protein Neighboring gene NEFA-interacting nuclear protein Neighboring gene P-glycoprotein 21 Neighboring gene HXXXD-type acyl-transferase family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Cadmium toxicity is alleviated by AtLCD and AtDCD in Escherichia coli. Shen JJ, et al. J Appl Microbiol, 2012 Nov. PMID 22816429
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_001340141.1
NM_116078.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables L-cysteine desulfhydrase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within L-cysteine catabolic process to pyruvate IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NP_191772.1
  • Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT5G26600.1); Has 4302 Blast hits to 4302 proteins in 1284 species: Archae - 105; Bacteria - 2583; Metazoa - 32; Fungi - 216; Plants - 120; Viruses - 0; Other Eukaryotes - 1246 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    23004788..23007006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116078.4 → NP_191772.1  Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191772.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M1R1
    UniProtKB/TrEMBL
    A0A178VKW4, A0A5S9XN96
    Conserved Domains (1) summary
    COG0520
    Location:55 → 444
    CsdA; Selenocysteine lyase/Cysteine desulfurase [Amino acid transport and metabolism]

  2. NM_001340141.1 → NP_001327694.1  Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M1R1
    UniProtKB/TrEMBL
    A0A178VKW4, A0A5S9XN96
    Conserved Domains (1) summary
    COG0520
    Location:55 → 444
    CsdA; Selenocysteine lyase/Cysteine desulfurase [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M1R1.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools