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GLP10 germin-like protein 10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825375, updated on 18-Sep-2024

Summary

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Official Symbol
GLP10
Official Full Name
germin-like protein 10
Primary source
TAIR:AT3G62020
Locus tag
AT3G62020
See related
Araport:AT3G62020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
germin-like protein 10
Summary
germin-like protein (GLP10)
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Genomic context

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See GLP10 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (22971358..22972303, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene metal ion-binding protein Neighboring gene rotamase CYP 4 Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene Putative endonuclease or glycosyl hydrolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
  2. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_116067.4
NM_202748.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall HDA PubMed 

General protein information

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Preferred Names
germin-like protein 10
NP_191761.1
  • germin-like protein 10 (GLP10); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein subfamily 2 member 2 precursor (TAIR:AT1G02335.1); Has 1676 Blast hits to 1670 proteins in 151 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 43; Plants - 1483; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
NP_974477.1
  • germin-like protein 10 (GLP10); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein subfamily 2 member 2 precursor (TAIR:AT1G02335.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22971358..22972303 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116067.4 → NP_191761.1  germin-like protein 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191761.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04352, Q9M263
    UniProtKB/TrEMBL
    A0A178VLQ9, A0A384LFT5, A0JQ09
    Conserved Domains (1) summary
    cd02241
    Location:23 → 215
    cupin_OxOx; Oxalate oxidase (germin), cupin domain

  2. NM_202748.1 → NP_974477.1  germin-like protein 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974477.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q3EAG0
    Conserved Domains (1) summary
    pfam00190
    Location:32 → 180
    Cupin_1; Cupin
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M263.1

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