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DAG1 Dof-type zinc finger DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825358, updated on 18-Sep-2024

Summary

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Official Symbol
DAG1
Official Full Name
Dof-type zinc finger DNA-binding family protein
Primary source
TAIR:AT3G61850
Locus tag
AT3G61850
See related
Araport:AT3G61850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
BBFA; dof affecting germination 1
Summary
Zinc finger transcription factor of the Dof family involved in the control of seed germination.
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Genomic context

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See DAG1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (22895268..22897732)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene auxin response factor 18 Neighboring gene auxin response factor, putative (DUF688) Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene plant/protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Inactivation of the phloem-specific Dof zinc finger gene DAG1 affects response to light and integrity of the testa of Arabidopsis seeds. Papi M, et al. Plant Physiol, 2002 Feb. PMID 11842145, Free PMC Article
  2. Identification and disruption of an Arabidopsis zinc finger gene controlling seed germination. Papi M, et al. Genes Dev, 2000 Jan 1. PMID 10640273, Free PMC Article
  3. DOF AFFECTING GERMINATION 2 is a positive regulator of light-mediated seed germination and is repressed by DOF AFFECTING GERMINATION 1. Santopolo S, et al. BMC Plant Biol, 2015 Mar 4. PMID 25850831, Free PMC Article
  4. Independent and interactive effects of DOF affecting germination 1 (DAG1) and the Della proteins GA insensitive (GAI) and Repressor of ga1-3 (RGA) in embryo development and seed germination. Boccaccini A, et al. BMC Plant Biol, 2014 Jul 26. PMID 25064446, Free PMC Article
  5. The DOF protein DAG1 and the DELLA protein GAI cooperate in negatively regulating the AtGA3ox1 gene. Boccaccini A, et al. Mol Plant, 2014 Sep. PMID 24719470

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. DAG2 is a positive regulator of the light-mediated seed germination process, and particularly reveal that this protein plays its main role downstream of PIL5 and DAG1 in the phytochrome B (phyB)-mediated pathway.
    Title: DOF AFFECTING GERMINATION 2 is a positive regulator of light-mediated seed germination and is repressed by DOF AFFECTING GERMINATION 1.
  2. GAI interacts with DAG1 in embryo development.
    Title: Independent and interactive effects of DOF affecting germination 1 (DAG1) and the Della proteins GA insensitive (GAI) and Repressor of ga1-3 (RGA) in embryo development and seed germination.
  3. DAG1 and the DELLA protein GAI cooperate in negatively regulating the AtGA3ox1 gene
    Title: The DOF protein DAG1 and the DELLA protein GAI cooperate in negatively regulating the AtGA3ox1 gene.
  4. ELIP (EARLY LIGHT-INDUCED PROTEIN) genes of Arabidopsis are involved in seed germination and that they act downstream of the Dof protein DAG1, although they are not its direct regulatory targets.
    Title: Inactivation of the ELIP1 and ELIP2 genes affects Arabidopsis seed germination.
  5. Data show that AtGA3ox1 is directly regulated by DAG1, and suggest that DAG1 is not a direct regulatory target of PIL5.
    Title: The Dof protein DAG1 mediates PIL5 activity on seed germination by negatively regulating GA biosynthetic gene AtGA3ox1.
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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084858.1
NM_001125413.2
NM_001340130.1
NM_116050.4
NM_180403.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables chromatin binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to red or far red light IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within seed germination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Dof-type zinc finger DNA-binding family protein
NP_001078327.1
  • dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.1); Has 1143 Blast hits to 1136 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1095; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
NP_001118885.1
  • dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_191744.1
  • dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.2); Has 1148 Blast hits to 1141 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1095; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
NP_850734.1
  • dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.1); Has 1143 Blast hits to 1136 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1095; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22895268..22897732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001125413.2 → NP_001118885.1  Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118885.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3H6D1
    Conserved Domains (1) summary
    pfam02701
    Location:74 → 129
    zf-Dof; Dof domain, zinc finger

  2. NM_116050.4 → NP_191744.1  Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191744.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q43385, Q8GYW3, Q9SAF9
    UniProtKB/TrEMBL
    B4F7P4
    Conserved Domains (1) summary
    pfam02701
    Location:74 → 129
    zf-Dof; Dof domain, zinc finger

  3. NM_180403.2 → NP_850734.1  Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850734.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q43385
    Conserved Domains (1) summary
    pfam02701
    Location:62 → 117
    zf-Dof; Dof domain, zinc finger

  4. NM_001340130.1 → NP_001325590.1  Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCA9, A0A1I9LLP8, A0A384L283
    Conserved Domains (1) summary
    pfam02701
    Location:62 → 117
    zf-Dof; Dof domain, zinc finger

  5. NM_001084858.1 → NP_001078327.1  Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078327.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q43385
    Conserved Domains (1) summary
    pfam02701
    Location:62 → 117
    zf-Dof; Dof domain, zinc finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q43385.2

Gene LinkOut

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