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SK21 SKP1-like 21 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825314, updated on 18-Sep-2024

Summary

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Official Symbol
SK21
Official Full Name
SKP1-like 21
Primary source
TAIR:AT3G61415
Locus tag
AT3G61415
See related
Araport:AT3G61415
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ASK21; SKP1-like 21
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Genomic context

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See SK21 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Sequence:
Chromosome: 3; NC_003074.8 (22722710..22726434, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene U-box kinase family protein Neighboring gene BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) Neighboring gene plasma membrane intrinsic protein 1A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Members of the Arabidopsis-SKP1-like gene family exhibit a variety of expression patterns and may play diverse roles in Arabidopsis. Zhao D, et al. Plant Physiol, 2003 Sep. PMID 12970487, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001125404.1
NM_116006.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SKP1-like 21
NP_001118876.1
  • SKP1-like 21 (SK21); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: stem, fruit, root, inflorescence, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 20 (TAIR:AT2G45950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_567113.1
  • SKP1-like 21 (SK21); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: stem, fruit, root, inflorescence, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 20 (TAIR:AT2G45950.1); Has 1341 Blast hits to 1337 proteins in 268 species: Archae - 0; Bacteria - 12; Metazoa - 524; Fungi - 168; Plants - 472; Viruses - 11; Other Eukaryotes - 154 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22722710..22726434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116006.4 → NP_567113.1  SKP1-like 21 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567113.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3H792, Q8LF97
    UniProtKB/TrEMBL
    A0A178V8V7
    Conserved Domains (3) summary
    smart00512
    Location:15 → 116
    Skp1; Found in Skp1 protein family
    pfam01466
    Location:117 → 156
    Skp1; Skp1 family, dimerization domain
    cl38926
    Location:132 → 192
    serpin; SERine Proteinase INhibitors (serpin) family

  2. NM_001125404.1 → NP_001118876.1  SKP1-like 21 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118876.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V8V7
    Conserved Domains (2) summary
    smart00512
    Location:15 → 116
    Skp1; Found in Skp1 protein family
    pfam01466
    Location:90 → 153
    Skp1; Skp1 family, dimerization domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LF97.1

Gene LinkOut

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