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pre-mRNA-splicing factor CWC22-like protein (DUF3245) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825309, updated on 18-Sep-2024

Summary

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Official Full Name
pre-mRNA-splicing factor CWC22-like protein (DUF3245)
Primary source
TAIR:AT3G61370
Locus tag
AT3G61370
See related
Araport:AT3G61370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2A19.3
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (22706242..22708509)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene SKP1 interacting partner 4 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001340088.1
NM_001340089.1
NM_116001.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
pre-mRNA-splicing factor CWC22-like protein (DUF3245)
NP_191696.1
  • Protein of unknown function (DUF3245); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3245 (InterPro:IPR021641); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3245) (TAIR:AT4G07940.1); Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22706242..22708509
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116001.4 → NP_191696.1  pre-mRNA-splicing factor CWC22-like protein (DUF3245) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191696.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKU2, A0A5S9XMU2, Q9M2C7
    Conserved Domains (1) summary
    pfam11595
    Location:12 → 122
    DUF3245; Protein of unknown function (DUF3245)

  2. NM_001340088.1 → NP_001327737.1  pre-mRNA-splicing factor CWC22-like protein (DUF3245) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKU2, A0A5S9XMU2, Q9M2C7
    Conserved Domains (1) summary
    pfam11595
    Location:12 → 122
    DUF3245; Protein of unknown function (DUF3245)

  3. NM_001340089.1 → NP_001327736.1  pre-mRNA-splicing factor CWC22-like protein (DUF3245) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKU2, A0A5S9XMU2, Q9M2C7
    Conserved Domains (1) summary
    pfam11595
    Location:12 → 122
    DUF3245; Protein of unknown function (DUF3245)
Nucleotide Protein
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