U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SKIP4 SKP1 interacting partner 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825307, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
SKIP4
Official Full Name
SKP1 interacting partner 4
Primary source
TAIR:AT3G61350
Locus tag
AT3G61350
See related
Araport:AT3G61350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
SKP1 interacting partner 4
Summary
Encodes an SKP1 interacting partner (SKIP4).
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SKIP4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (22702632..22704481)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ncRNA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene pre-mRNA-splicing factor CWC22-like protein (DUF3245) Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase. Farrás R, et al. EMBO J, 2001 Jun 1. PMID 11387208, Free PMC Article
  2. The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions. Vergnolle C, et al. Plant Physiol, 2005 Nov. PMID 16258011, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001340087.1
NM_115999.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
SKP1 interacting partner 4
NP_567112.1
  • SKP1 interacting partner 4 (SKIP4); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G55270.1); Has 3566 Blast hits to 2975 proteins in 175 species: Archae - 6; Bacteria - 195; Metazoa - 2199; Fungi - 2; Plants - 1060; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22702632..22704481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115999.5 → NP_567112.1  SKP1 interacting partner 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567112.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GW14, Q9FV01, Q9M2C9
    UniProtKB/TrEMBL
    A0A5S9XPH5, A0A7G2EZK0
    Conserved Domains (4) summary
    PHA03098
    Location:100 → 322
    PHA03098; kelch-like protein; Provisional
    PRK14131
    Location:83 → 150
    PRK14131; N-acetylneuraminate epimerase
    sd00038
    Location:112 → 157
    Kelch; KELCH repeat [structural motif]
    pfam00646
    Location:22 → 60
    F-box; F-box domain

  2. NM_001340087.1 → NP_001327045.1  SKP1 interacting partner 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GW14, Q9FV01, Q9M2C9
    UniProtKB/TrEMBL
    A0A5S9XPH5, A0A7G2EZK0
    Conserved Domains (4) summary
    PHA03098
    Location:100 → 322
    PHA03098; kelch-like protein; Provisional
    PRK14131
    Location:83 → 150
    PRK14131; N-acetylneuraminate epimerase
    sd00038
    Location:112 → 157
    Kelch; KELCH repeat [structural motif]
    pfam00646
    Location:22 → 60
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M2C9.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools