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AT hook motif DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825303, updated on 18-Sep-2024

Summary

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Official Full Name
AT hook motif DNA-binding family protein
Primary source
TAIR:AT3G61310
Locus tag
AT3G61310
See related
Araport:AT3G61310
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AHL11; AT-hook motif nuclear localized protein 11
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (22687610..22693150, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene O-glucosyltransferase rumi-like protein (DUF821) Neighboring gene O-glucosyltransferase rumi-like protein (DUF821) Neighboring gene C2 calcium/lipid-binding plant phosphoribosyltransferase family protein Neighboring gene Bestrophin-like protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

NM_115995.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables minor groove of adenine-thymine-rich DNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
AT hook motif DNA-binding family protein
NP_191690.2
  • AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT2G45850.2); Has 861 Blast hits to 857 proteins in 59 species: Archae - 0; Bacteria - 6; Metazoa - 83; Fungi - 11; Plants - 756; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22687610..22693150 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115995.6 → NP_191690.2  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191690.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L7L5, Q9M2D3
    UniProtKB/TrEMBL
    A0A178VA95, A0A5S9XNG0, A0A654FJQ3, A0A7G2EVS5
    Conserved Domains (1) summary
    pfam03479
    Location:167 → 280
    DUF296; Domain of unknown function (DUF296)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L7L5.1

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