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Thioesterase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825292, updated on 18-Sep-2024

Summary

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Official Full Name
Thioesterase superfamily protein
Primary source
TAIR:AT3G61200
Locus tag
AT3G61200
See related
Araport:AT3G61200
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (22657455..22658582, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene BON association protein 1 Neighboring gene ncRNA Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene GATA type zinc finger transcription factor family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In-depth proteome analysis of Arabidopsis leaf peroxisomes combined with in vivo subcellular targeting verification indicates novel metabolic and regulatory functions of peroxisomes. Reumann S, et al. Plant Physiol, 2009 May. PMID 19329564, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_115984.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables fatty acyl-CoA hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in peroxisome IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Thioesterase superfamily protein
NP_191679.1
  • Thioesterase superfamily protein; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT1G04290.1); Has 296 Blast hits to 296 proteins in 69 species: Archae - 1; Bacteria - 37; Metazoa - 61; Fungi - 14; Plants - 161; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22657455..22658582 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115984.2 → NP_191679.1  Thioesterase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191679.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VDN1, A0A654FJP0, Q9M2E4
    Conserved Domains (1) summary
    cd03443
    Location:72 → 181
    PaaI_thioesterase; PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not ...
Nucleotide Protein
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