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Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825175, updated on 18-Sep-2024

Summary

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Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT3G60050
Locus tag
AT3G60050
See related
Araport:AT3G60050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (22180000..22181970, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene F-box family protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene Major facilitator superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001340016.1
NM_115868.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_191564.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G55630.1); Has 44102 Blast hits to 13509 proteins in 285 species: Archae - 3; Bacteria - 33; Metazoa - 397; Fungi - 634; Plants - 41680; Viruses - 0; Other Eukaryotes - 1355 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22180000..22181970 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115868.3 → NP_191564.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191564.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M1D8
    UniProtKB/TrEMBL
    A0A654FJD7
    Conserved Domains (3) summary
    PLN03218
    Location:152 → 435
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:361 → 388
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:423 → 456
    PPR_1; PPR repeat

  2. NM_001340016.1 → NP_001326964.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M1D8
    UniProtKB/TrEMBL
    A0A654FJD7
    Conserved Domains (3) summary
    PLN03218
    Location:152 → 435
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:361 → 388
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:423 → 456
    PPR_1; PPR repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M1D8.1

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