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Leucine-rich repeat (LRR) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825120, updated on 18-Sep-2024

Summary

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Official Full Name
Leucine-rich repeat (LRR) family protein
Primary source
TAIR:AT3G59510
Locus tag
AT3G59510
See related
Araport:AT3G59510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (21988389..21989847, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pfkB-like carbohydrate kinase family protein Neighboring gene uncharacterized protein Neighboring gene Integral membrane HRF1 family protein Neighboring gene miscRNA Neighboring gene RHOMBOID-like protein 13 Neighboring gene Calcium-dependent phosphotriesterase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The leucine-rich repeat as a protein recognition motif. Kobe B, et al. Curr Opin Struct Biol, 2001 Dec. PMID 11751054
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_115813.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction IC
Inferred by Curator
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Leucine-rich repeat (LRR) family protein
NP_191510.1
  • Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G15320.1); Has 61362 Blast hits to 22329 proteins in 929 species: Archae - 22; Bacteria - 4305; Metazoa - 9233; Fungi - 496; Plants - 43466; Viruses - 3; Other Eukaryotes - 3837 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21988389..21989847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115813.2 → NP_191510.1  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191510.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XMG2, A0A654FJ84, Q9M1B6
    Conserved Domains (2) summary
    PLN00113
    Location:96 → 372
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:121 → 144
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
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