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F-box/RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825088, updated on 18-Sep-2024

Summary

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Official Full Name
F-box/RNI-like superfamily protein
Primary source
TAIR:AT3G59190
Locus tag
AT3G59190
See related
Araport:AT3G59190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (21884426..21886808)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Protein with RNI-like/FBD-like domain Neighboring gene ncRNA Neighboring gene F-box/RNI-like superfamily protein Neighboring gene F-box/RNI-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_115781.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
F-box/RNI-like superfamily protein
NP_191478.2
  • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G14103.2); Has 1982 Blast hits to 1934 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1982; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21884426..21886808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339952.1 → NP_001327549.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCS0, A0A1I9LSN3

  2. NM_115781.3 → NP_191478.2  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191478.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q1PED9, Q9LX52
    UniProtKB/TrEMBL
    A0MF35
    Conserved Domains (3) summary
    sd00032
    Location:147 → 169
    LRR_2; leucine-rich repeat [structural motif]
    pfam07723
    Location:169 → 196
    LRR_2; Leucine Rich Repeat
    pfam00646
    Location:12 → 48
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q1PED9.1

Gene LinkOut

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