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PME61 pectin methylesterase 61 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825070, updated on 18-Sep-2024

Summary

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Official Symbol
PME61
Official Full Name
pectin methylesterase 61
Primary source
TAIR:AT3G59010
Locus tag
AT3G59010
See related
Araport:AT3G59010
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
pectin methylesterase 35; pectin methylesterase 61; PME35
Summary
Encodes PME35, a pectin methylesterase. PME35-mediated demethylesterification of the primary cell wall regulates the mechanical strength of the supporting tissue.
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Genomic context

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See PME61 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (21802770..21805335, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene isopropylmalate isomerase 1 Neighboring gene F-box/RNI-like superfamily protein Neighboring gene ARM repeat superfamily protein Neighboring gene MATE efflux family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Demethylesterification of the primary wall by PECTIN METHYLESTERASE35 provides mechanical support to the Arabidopsis stem. Hongo S, et al. Plant Cell, 2012 Jun. PMID 22693281, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_115763.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables enzyme inhibitor activity IEA
Inferred from Electronic Annotation
more info
  
enables pectinesterase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
  
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
pectin methylesterase 61
NP_191460.1
  • pectin methylesterase 61 (PME61); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G43050.1); Has 2708 Blast hits to 2657 proteins in 324 species: Archae - 6; Bacteria - 591; Metazoa - 1; Fungi - 200; Plants - 1884; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21802770..21805335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115763.3 → NP_191460.1  pectin methylesterase 61 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191460.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LYT5
    UniProtKB/TrEMBL
    A0A178V613, A0A5S9XM67
    Conserved Domains (1) summary
    PLN02170
    Location:2 → 529
    PLN02170; probable pectinesterase/pectinesterase inhibitor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LYT5.1

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