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PMD1 Tropomyosin-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825053, updated on 18-Sep-2024

Summary

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Official Symbol
PMD1
Official Full Name
Tropomyosin-like protein
Primary source
TAIR:AT3G58840
Locus tag
AT3G58840
See related
Araport:AT3G58840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
peroxisomal and mitochondrial division factor 1
Summary
Encodes PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR1. Involved in the morphogenesis and proliferation of peroxisomes and mitochondria.
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Genomic context

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See PMD1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (21757073..21758969, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like superfamily protein Neighboring gene haloacid dehalogenase (HAD) superfamily protein Neighboring gene phy rapidly regulated 2 Neighboring gene F-box/RNI-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Kinase MPK17 and the Peroxisome Division Factor PMD1 Influence Salt-induced Peroxisome Proliferation. Frick EM, et al. Plant Physiol, 2018 Jan. PMID 28931630, Free PMC Article
  2. The Arabidopsis tail-anchored protein PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR1 is involved in the morphogenesis and proliferation of peroxisomes and mitochondria. Aung K, et al. Plant Cell, 2011 Dec. PMID 22147290, Free PMC Article
  3. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
  4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. MPK17 and PMD1 are involved in peroxisome proliferation in response to sodium chloride stress.
    Title: Kinase MPK17 and the Peroxisome Division Factor PMD1 Influence Salt-induced Peroxisome Proliferation.
  2. PEROXISOMAL and MITOCHONDRIAL DIVISION FACTOR1 (PMD1) facilitates peroxisomal and mitochondrial proliferation.
    Title: The Arabidopsis tail-anchored protein PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR1 is involved in the morphogenesis and proliferation of peroxisomes and mitochondria.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084843.2
NM_115746.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within mitochondrion organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within peroxisome organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in mitochondrial membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion HDA PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in peroxisomal membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in peroxisome IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Tropomyosin-like protein
NP_001078312.1
  • Tropomyosin-related; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Tropomyosin-related (TAIR:AT1G06530.1); Has 153329 Blast hits to 70216 proteins in 3225 species: Archae - 2898; Bacteria - 24754; Metazoa - 70421; Fungi - 12510; Plants - 7496; Viruses - 710; Other Eukaryotes - 34540 (source: NCBI BLink).
NP_191443.1
  • Tropomyosin-related; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Tropomyosin-related (TAIR:AT1G06530.1); Has 153429 Blast hits to 70272 proteins in 3237 species: Archae - 2904; Bacteria - 24810; Metazoa - 70427; Fungi - 12541; Plants - 7497; Viruses - 710; Other Eukaryotes - 34540 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21757073..21758969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084843.2 → NP_001078312.1  Tropomyosin-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078312.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L998, Q9LXR8
    UniProtKB/TrEMBL
    A0A178VH75, A0A5S9XMB8
    Conserved Domains (1) summary
    TIGR02168
    Location:24 → 266
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. NM_115746.1 → NP_191443.1  Tropomyosin-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191443.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L998, Q9LXR8
    UniProtKB/TrEMBL
    A0A178VH75, A0A5S9XMB8
    Conserved Domains (1) summary
    TIGR02168
    Location:24 → 266
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LXR8.1

Gene LinkOut

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