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Integrin-linked protein kinase family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825045, updated on 18-Sep-2024

Summary

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Official Full Name
Integrin-linked protein kinase family
Primary source
TAIR:AT3G58760
Locus tag
AT3G58760
See related
Araport:AT3G58760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
13
Sequence:
Chromosome: 3; NC_003074.8 (21728144..21732086)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene citrate synthase 1 Neighboring gene citrate synthase 2 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene K-box region and MADS-box transcription factor family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide analysis and experimentation of plant serine/ threonine/tyrosine-specific protein kinases. Rudrabhatla P, et al. Plant Mol Biol, 2006 Jan. PMID 16429265
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_115738.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine/tyrosine kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Integrin-linked protein kinase family
NP_567074.2
  • Integrin-linked protein kinase family; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: regulation of signal transduction, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Integrin-linked protein kinase (InterPro:IPR016253), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Ankyrin repeat-containing domain (InterPro:IPR020683), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Integrin-linked protein kinase family (TAIR:AT4G18950.1); Has 165609 Blast hits to 134537 proteins in 4793 species: Archae - 244; Bacteria - 16399; Metazoa - 69591; Fungi - 13531; Plants - 33415; Viruses - 845; Other Eukaryotes - 31584 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21728144..21732086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339932.1 → NP_001325818.1  Integrin-linked protein kinase family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LMD9

  2. NM_001339933.1 → NP_001325814.1  Integrin-linked protein kinase family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LMD5, A0A5S9XMR3, A0A654FJ17
    Conserved Domains (3) summary
    cd13999
    Location:235 → 487
    STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
    sd00045
    Location:116 → 142
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:116 → 206
    Ank_2; Ankyrin repeats (3 copies)

  3. NM_001339934.1 → NP_001325816.1  Integrin-linked protein kinase family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LMD9

  4. NM_001339935.1 → NP_001325817.1  Integrin-linked protein kinase family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LMD5, A0A5S9XMR3, A0A654FJ17
    Conserved Domains (3) summary
    cd13999
    Location:235 → 487
    STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
    sd00045
    Location:116 → 142
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:116 → 206
    Ank_2; Ankyrin repeats (3 copies)

  5. NM_001339936.1 → NP_001325815.1  Integrin-linked protein kinase family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LMD6

  6. NM_115738.4 → NP_567074.2  Integrin-linked protein kinase family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567074.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EXU1, F4J703, Q9LXS5
    Conserved Domains (3) summary
    cd13999
    Location:172 → 424
    STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
    sd00045
    Location:53 → 79
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:53 → 143
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
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