DNAse I-like superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: DNAse I-like superfamily protein
Primary source: TAIR:AT3G58560
Locus tag: AT3G58560
See related: Araport:AT3G58560
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 11

Sequence:: Chromosome: 3; NC_003074.8 (21650565..21654200, complement)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

AtCCR4a and AtCCR4b are localized to the cytoplasmic foci called the cytoplasmic mRNA processing bodies (P-bodies) and are involved in sucrose and starch metabolism. It was also revealed that AtCCR4a and AtCCR4b are involved in determining the poly(A) length of the Granule-bound starch synthase 1 (GBSS1) transcript. [AtCCR4a]
Title: AtCCR4a and AtCCR4b are Involved in Determining the Poly(A) Length of Granule-bound starch synthase 1 Transcript and Modulating Sucrose and Starch Metabolism in Arabidopsis thaliana.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_115718.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables poly(A)-specific ribonuclease activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within mRNA processing	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within starch biosynthetic process	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within sucrose biosynthetic process	IGI Inferred from Genetic Interaction more info	PubMed

Component	Evidence Code	Pubs
located_in P-body	IPI Inferred from Physical Interaction more info	PubMed

General protein information

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Preferred Names: DNAse I-like superfamily protein

NP_191415.2

DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT3G58580.1); Has 1372 Blast hits to 1328 proteins in 220 species: Archae - 0; Bacteria - 20; Metazoa - 540; Fungi - 247; Plants - 315; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

21650565..21654200 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_115718.4 → NP_191415.2 DNAse I-like superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_191415.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8W0Z9, Q9M2G0

UniProtKB/TrEMBL

A0A178VHZ0, A0A5S9XLZ0

Conserved Domains (1) summary

PLN03144
Location:1 → 598

PLN03144; Carbon catabolite repressor protein 4 homolog; Provisional