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TRAF-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825013, updated on 18-Sep-2024

Summary

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Official Full Name
TRAF-like superfamily protein
Primary source
TAIR:AT3G58440
Locus tag
AT3G58440
See related
Araport:AT3G58440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (21618446..21621249, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene TRAF-like superfamily protein Neighboring gene MATH domain/coiled-coil protein Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene RHOMBOID-like protein 15 Neighboring gene nucleic acid binding / methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TRAF-like superfamily protein
NP_191403.1
  • TRAF-like superfamily protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT3G58410.1); Has 1621 Blast hits to 1160 proteins in 208 species: Archae - 7; Bacteria - 111; Metazoa - 174; Fungi - 133; Plants - 925; Viruses - 9; Other Eukaryotes - 262 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21618446..21621249 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115706.1 → NP_191403.1  TRAF-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191403.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VA60
    Conserved Domains (1) summary
    cd00121
    Location:10 → 132
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
Nucleotide Protein
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