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Eukaryotic release factor 1 (eRF1) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825008, updated on 18-Sep-2024

Summary

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Official Full Name
Eukaryotic release factor 1 (eRF1) family protein
Primary source
TAIR:AT3G58390
Locus tag
AT3G58390
See related
Araport:AT3G58390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (21600030..21601334, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene TRAF-like family protein Neighboring gene TRAF-like family protein Neighboring gene TRAF-like family protein Neighboring gene TRAF-like family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The No-go decay system degrades plant mRNAs that contain a long A-stretch in the coding region. Szádeczky-Kardoss I, et al. Plant Sci, 2018 Oct. PMID 30107878
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA surveillance IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within nuclear-transcribed mRNA catabolic process, no-go decay IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within nuclear-transcribed mRNA catabolic process, non-stop decay IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Eukaryotic release factor 1 (eRF1) family protein
NP_191398.1
  • Eukaryotic release factor 1 (eRF1) family protein; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination, translation; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Probable translation factor pelota (InterPro:IPR004405); BEST Arabidopsis thaliana protein match is: Eukaryotic release factor 1 (eRF1) family protein (TAIR:AT4G27650.1); Has 768 Blast hits to 765 proteins in 318 species: Archae - 259; Bacteria - 0; Metazoa - 140; Fungi - 157; Plants - 51; Viruses - 1; Other Eukaryotes - 160 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21600030..21601334 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115701.2 → NP_191398.1  Eukaryotic release factor 1 (eRF1) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191398.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M2H7
    UniProtKB/TrEMBL
    A0A654FIW3
    Conserved Domains (1) summary
    cl30759
    Location:1 → 388
    PelA; Stalled ribosome rescue protein Dom34, pelota family [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M2H7.1

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