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XIJ P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824985, updated on 18-Sep-2024

Summary

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Official Symbol
XIJ
Official Full Name
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Primary source
TAIR:AT3G58160
Locus tag
AT3G58160
See related
Araport:AT3G58160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATMYOS3; ATXIJ; MYA3; MYOSIN A3; MYOSIN XI J; MYOSIN XI-16; XI-16
Summary
Class XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plants
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Genomic context

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See XIJ in Genome Data Viewer
Location:
chromosome: 3
Exon count:
26
Sequence:
Chromosome: 3; NC_003074.8 (21534064..21542127)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene ncRNA Neighboring gene N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein Neighboring gene phenylalanyl-tRNA synthetase class IIc family protein Neighboring gene Optic atrophy 3 protein (OPA3) Neighboring gene tRNA-Gly Neighboring gene BET1P/SFT1P-like protein 14A Neighboring gene ARM repeat superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular analysis of the myosin gene family in Arabidopsis thaliana. Kinkema M, et al. Plant Mol Biol, 1994 Nov. PMID 7811972
  2. Analysis of the myosins encoded in the recently completed Arabidopsis thaliana genome sequence. Reddy AS, et al. Genome Biol, 2001. PMID 11516337, Free PMC Article
  3. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001339909.1
NM_001339912.1
NM_115678.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cytoskeletal motor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within actin filament-based movement TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
part_of myosin complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in plant-type vacuole HDA PubMed 

General protein information

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Preferred Names
P-loop containing nucleoside triphosphate hydrolases superfamily protein
NP_001319790.1
  • XIJ; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex, vacuole; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 12832 Blast hits to 9780 proteins in 894 species: Archae - 19; Bacteria - 223; Metazoa - 7630; Fungi - 1066; Plants - 790; Viruses - 83; Other Eukaryotes - 3021 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21534064..21542127
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339911.1 → NP_001327764.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCK3, A0A1I9LTB4

  2. NM_001339910.1 → NP_001327763.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCK3, A0A1I9LTB3, A0A654FIU3

  3. NM_001339909.1 → NP_001319790.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q39159, Q9M2K0
    UniProtKB/TrEMBL
    A0A178VCK3, A0A5S9XM37, A0A654FIU3
    Conserved Domains (4) summary
    smart00015
    Location:829 → 849
    IQ; Calmodulin-binding motif
    cd01384
    Location:74 → 717
    MYSc_Myo11; class XI myosin, motor domain
    pfam02736
    Location:9 → 46
    Myosin_N; Myosin N-terminal SH3-like domain
    cl27170
    Location:1081 → 1142
    DUF460; Protein of unknown function (DUF460)

  4. NM_001339912.1 → NP_001327762.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCK3, A0A1I9LTB4

  5. NM_115678.2 → NP_191375.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191375.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q39159, Q9M2K0
    UniProtKB/TrEMBL
    A0A178VCK3, A0A5S9XM37, A0A654FIU3
    Conserved Domains (4) summary
    smart00015
    Location:829 → 849
    IQ; Calmodulin-binding motif
    cd01384
    Location:74 → 717
    MYSc_Myo11; class XI myosin, motor domain
    pfam02736
    Location:9 → 46
    Myosin_N; Myosin N-terminal SH3-like domain
    cl27170
    Location:1081 → 1142
    DUF460; Protein of unknown function (DUF460)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M2K0.1

Gene LinkOut

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