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RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824972, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT3G58030
Locus tag
AT3G58030
See related
Araport:AT3G58030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (21484156..21487102)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene plastoglobulin 34kD Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene tRNA-Ser Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Individual components of paired typical NLR immune receptors are regulated by distinct E3 ligases. Dong OX, et al. Nat Plants, 2018 Sep. PMID 30082764
  2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001203193.1
NM_115665.6
NM_202724.3
NM_202725.1

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within protein autoubiquitination IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_001190122.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42030.1).
NP_191362.2
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42030.1); Has 4227 Blast hits to 4219 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 2446; Fungi - 474; Plants - 832; Viruses - 22; Other Eukaryotes - 453 (source: NCBI BLink).
NP_974453.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_974454.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21484156..21487102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203193.1 → NP_001190122.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190122.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJH0, A0A384L3Q5, A0A5S9XM00, Q8RXF2
    Conserved Domains (2) summary
    PLN03208
    Location:134 → 226
    PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
    cd16745
    Location:137 → 180
    RING-HC_AtRMA_like; RING finger, HC subclass, found in Arabidopsis thaliana RING membrane-anchor proteins (AtRMAs) and similar proteins

  2. NM_115665.6 → NP_191362.2  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191362.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJH0, A0A384L3Q5, A0A5S9XM00, Q8RXF2
    Conserved Domains (2) summary
    PLN03208
    Location:134 → 226
    PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
    cd16745
    Location:137 → 180
    RING-HC_AtRMA_like; RING finger, HC subclass, found in Arabidopsis thaliana RING membrane-anchor proteins (AtRMAs) and similar proteins

  3. NM_202724.3 → NP_974453.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974453.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJH0, A0A384L3Q5, A0A5S9XM00, Q8RXF2
    Conserved Domains (2) summary
    PLN03208
    Location:134 → 226
    PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
    cd16745
    Location:137 → 180
    RING-HC_AtRMA_like; RING finger, HC subclass, found in Arabidopsis thaliana RING membrane-anchor proteins (AtRMAs) and similar proteins

  4. NM_202725.1 → NP_974454.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974454.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJH0, A0A384L3Q5, A0A5S9XM00, Q8RXF2
    Conserved Domains (2) summary
    PLN03208
    Location:134 → 226
    PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
    cd16745
    Location:137 → 180
    RING-HC_AtRMA_like; RING finger, HC subclass, found in Arabidopsis thaliana RING membrane-anchor proteins (AtRMAs) and similar proteins
Nucleotide Protein
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