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Tubulin binding cofactor C domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824958, updated on 18-Sep-2024

Summary

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Official Full Name
Tubulin binding cofactor C domain-containing protein
Primary source
TAIR:AT3G57890
Locus tag
AT3G57890
See related
Araport:AT3G57890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (21438075..21442085)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene sumo conjugation enzyme 1 Neighboring gene Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein Neighboring gene import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein Neighboring gene D111/G-patch domain-containing protein Neighboring gene squamosa promoter binding protein-like 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001203191.1
NM_115651.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tubulin binding cofactor C domain-containing protein
NP_001190120.1
  • Tubulin binding cofactor C domain-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CARP motif (InterPro:IPR006599), C-CAP/cofactor C-like domain (InterPro:IPR017901), Tubulin binding cofactor C (InterPro:IPR012945); BEST Arabidopsis thaliana protein match is: C-CAP/cofactor C-like domain-containing protein (TAIR:AT2G42230.2).
NP_567059.1
  • Tubulin binding cofactor C domain-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CARP motif (InterPro:IPR006599), C-CAP/cofactor C-like domain (InterPro:IPR017901), Tubulin binding cofactor C (InterPro:IPR012945); BEST Arabidopsis thaliana protein match is: C-CAP/cofactor C-like domain-containing protein (TAIR:AT2G42230.2); Has 385 Blast hits to 385 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21438075..21442085
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115651.3 → NP_567059.1  Tubulin binding cofactor C domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567059.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FIS9, Q940S9
    Conserved Domains (1) summary
    pfam07986
    Location:337 → 451
    TBCC; Tubulin binding cofactor C

  2. NM_001203191.1 → NP_001190120.1  Tubulin binding cofactor C domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190120.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FIS9, F4J4K6
    Conserved Domains (1) summary
    pfam07986
    Location:373 → 487
    TBCC; Tubulin binding cofactor C
Nucleotide Protein
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