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Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824957, updated on 18-Sep-2024

Summary

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Official Full Name
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
Primary source
TAIR:AT3G57880
Locus tag
AT3G57880
See related
Araport:AT3G57880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (21430922..21434648, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene UV-B-insensitive 4-like protein Neighboring gene sumo conjugation enzyme 1 Neighboring gene Tubulin binding cofactor C domain-containing protein Neighboring gene import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multiple C2 domains and transmembrane region proteins (MCTPs) tether membranes at plasmodesmata. Brault ML, et al. EMBO Rep, 2019 Aug. PMID 31286648, Free PMC Article
  2. FTIP-Dependent STM Trafficking Regulates Shoot Meristem Development in Arabidopsis. Liu L, et al. Cell Rep, 2018 May 8. PMID 29742441
  3. Characterization of Multiple C2 Domain and Transmembrane Region Proteins in Arabidopsis. Liu L, et al. Plant Physiol, 2018 Mar. PMID 29259105, Free PMC Article
  4. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
  5. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001339897.1
NM_115650.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within shoot apical meristem development IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endoplasmic reticulum HDA PubMed 
located_in endosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall HDA PubMed 
colocalizes_with plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
NP_191347.1
  • Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: endoplasmic reticulum, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (TAIR:AT1G51570.1); Has 5845 Blast hits to 4237 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 3557; Fungi - 274; Plants - 1573; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21430922..21434648 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339896.1 → NP_001327705.1  Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VJU5, Q0TV71, Q94JQ8, Q9M2R0
    UniProtKB/TrEMBL
    A0A384L1I1, A0A5S9XLS5, A0A654EIZ4
    Conserved Domains (4) summary
    cd04019
    Location:202 → 351
    C2C_MCTP_PRT_plant; C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
    cd08378
    Location:40 → 164
    C2B_MCTP_PRT_plant; C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
    cd08379
    Location:363 → 490
    C2D_MCTP_PRT_plant; C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
    pfam08372
    Location:618 → 773
    PRT_C; Plant phosphoribosyltransferase C-terminal

  2. NM_001339898.1 → NP_001327704.1  Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VJU5, Q0TV71, Q94JQ8, Q9M2R0
    UniProtKB/TrEMBL
    A0A384L1I1, A0A5S9XLS5, A0A654EIZ4
    Conserved Domains (4) summary
    cd04019
    Location:202 → 351
    C2C_MCTP_PRT_plant; C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
    cd08378
    Location:40 → 164
    C2B_MCTP_PRT_plant; C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
    cd08379
    Location:363 → 490
    C2D_MCTP_PRT_plant; C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
    pfam08372
    Location:618 → 773
    PRT_C; Plant phosphoribosyltransferase C-terminal

  3. NM_115650.5 → NP_191347.1  Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191347.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VJU5, Q0TV71, Q94JQ8, Q9M2R0
    UniProtKB/TrEMBL
    A0A384L1I1, A0A5S9XLS5, A0A654EIZ4
    Conserved Domains (4) summary
    cd04019
    Location:202 → 351
    C2C_MCTP_PRT_plant; C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
    cd08378
    Location:40 → 164
    C2B_MCTP_PRT_plant; C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
    cd08379
    Location:363 → 490
    C2D_MCTP_PRT_plant; C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
    pfam08372
    Location:618 → 773
    PRT_C; Plant phosphoribosyltransferase C-terminal

  4. NM_001339897.1 → NP_001327706.1  Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VJU5, Q0TV71, Q94JQ8, Q9M2R0
    UniProtKB/TrEMBL
    A0A384L1I1, A0A5S9XLS5, A0A654EIZ4
    Conserved Domains (4) summary
    cd04019
    Location:202 → 351
    C2C_MCTP_PRT_plant; C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
    cd08378
    Location:40 → 164
    C2B_MCTP_PRT_plant; C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
    cd08379
    Location:363 → 490
    C2D_MCTP_PRT_plant; C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
    pfam08372
    Location:618 → 773
    PRT_C; Plant phosphoribosyltransferase C-terminal
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M2R0.1

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