U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

JRG21 jasmonate-regulated gene 21 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824763, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
JRG21
Official Full Name
jasmonate-regulated gene 21
Primary source
TAIR:AT3G55970
Locus tag
AT3G55970
See related
Araport:AT3G55970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATJRG21; jasmonate-regulated gene 21
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See JRG21 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (20766735..20769410, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene CRINKLY4 related 3 Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene salt-inducible zinc finger 1 Neighboring gene trichome birefringence-like protein (DUF828)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Jasmonic Acid Oxidase 2 Hydroxylates Jasmonic Acid and Represses Basal Defense and Resistance Responses against Botrytis cinerea Infection. Smirnova E, et al. Mol Plant, 2017 Sep 12. PMID 28760569
  2. Arabidopsis JASMONATE-INDUCED OXYGENASES down-regulate plant immunity by hydroxylation and inactivation of the hormone jasmonic acid. Caarls L, et al. Proc Natl Acad Sci U S A, 2017 Jun 13. PMID 28559313, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help
NM_001339761.1
NM_115455.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables jasmonic acid hydrolase IDA
Inferred from Direct Assay
more info
 PubMed 
enables jasmonic acid hydrolase IGI
Inferred from Genetic Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of defense response to insect IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of defense response to fungus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of jasmonic acid mediated signaling pathway IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
jasmonate-regulated gene 21
NP_191156.1
  • jasmonate-regulated gene 21 (JRG21); FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1); Has 8809 Blast hits to 8750 proteins in 1005 species: Archae - 0; Bacteria - 1115; Metazoa - 109; Fungi - 1073; Plants - 4993; Viruses - 0; Other Eukaryotes - 1519 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20766735..20769410 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115455.5 → NP_191156.1  jasmonate-regulated gene 21 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191156.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LY48
    UniProtKB/TrEMBL
    A0A178V764, A0A5S9XL77
    Conserved Domains (1) summary
    PLN02393
    Location:1 → 363
    PLN02393; leucoanthocyanidin dioxygenase like protein

  2. NM_001339761.1 → NP_001325581.1  jasmonate-regulated gene 21 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LLN9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LY48.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.