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Yippee family putative zinc-binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824755, updated on 18-Sep-2024

Summary

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Official Full Name
Yippee family putative zinc-binding protein
Primary source
TAIR:AT3G55890
Locus tag
AT3G55890
See related
Araport:AT3G55890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (20740610..20742441)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Alpha/beta hydrolase related protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene F-box family protein Neighboring gene ADP-ribosylation factor GTPase-activating protein Neighboring gene Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene pre-mRNA-splicing factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001339758.1
NM_001339759.1
NM_115447.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Yippee family putative zinc-binding protein
NP_191148.1
  • Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1); Has 985 Blast hits to 985 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 467; Fungi - 205; Plants - 238; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20740610..20742441
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339757.1 → NP_001325435.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LL83, A0A5S9XLG8

  2. NM_115447.2 → NP_191148.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191148.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LY56
    UniProtKB/TrEMBL
    A0A178VPQ0, A0A384KWG8, A0A5S9XLG8, Q0WPD7
    Conserved Domains (1) summary
    cl13152
    Location:16 → 106
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains

  3. NM_001339758.1 → NP_001325434.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LL83, A0A5S9XLG8

  4. NM_001339759.1 → NP_001325433.1  Yippee family putative zinc-binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LY56
    UniProtKB/TrEMBL
    A0A178VPQ0, A0A384KWG8, A0A5S9XLG8, Q0WPD7
    Conserved Domains (1) summary
    cl13152
    Location:16 → 106
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LY56.1

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