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eIF6A Translation initiation factor IF6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824728, updated on 18-Sep-2024

Summary

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Official Symbol
eIF6A
Official Full Name
Translation initiation factor IF6
Primary source
TAIR:AT3G55620
Locus tag
AT3G55620
See related
Araport:AT3G55620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
emb1624; embryo defective 1624; eukaryotic initiation facor 6A
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Genomic context

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See eIF6A in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Sequence:
Chromosome: 3; NC_003074.8 (20634057..20636555)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Membrane fusion protein Use1 Neighboring gene Mitochondrial glycoprotein family protein Neighboring gene delta 1-pyrroline-5-carboxylate synthase 2 Neighboring gene DHFS-FPGS homolog D Neighboring gene Mitochondrial substrate carrier family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Involvement of Arabidopsis RACK1 in protein translation and its regulation by abscisic acid. Guo J, et al. Plant Physiol, 2011 Jan. PMID 21098678, Free PMC Article
  2. The RING E3 Ligase KEEP ON GOING Modulates JASMONATE ZIM-DOMAIN12 Stability. Pauwels L, et al. Plant Physiol, 2015 Oct. PMID 26320228, Free PMC Article
  3. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
  4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_115420.4

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to abscisic acid stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleolus HDA PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Translation initiation factor IF6
NP_191121.1
  • embryo defective 1624 (emb1624); FUNCTIONS IN: ribosome binding, translation initiation factor activity; INVOLVED IN: translational initiation, embryo development ending in seed dormancy; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF6 (InterPro:IPR002769); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF6 (TAIR:AT2G39820.1); Has 941 Blast hits to 941 proteins in 349 species: Archae - 255; Bacteria - 0; Metazoa - 235; Fungi - 146; Plants - 134; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20634057..20636555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115420.4 → NP_191121.1  Translation initiation factor IF6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191121.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M060
    UniProtKB/TrEMBL
    A0A178VEN3, A0A5S9XL42
    Conserved Domains (1) summary
    PTZ00136
    Location:1 → 244
    PTZ00136; eukaryotic translation initiation factor 6-like protein; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M060.1

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