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Calcium-dependent lipid-binding (CaLB domain) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824713, updated on 18-Sep-2024

Summary

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Official Full Name
Calcium-dependent lipid-binding (CaLB domain) family protein
Primary source
TAIR:AT3G55470
Locus tag
AT3G55470
See related
Araport:AT3G55470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (20564081..20566329)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene PBS1-like 1 Neighboring gene SC35-like splicing factor 30 Neighboring gene protein affected trafficking 2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene GINS complex protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Solution NMR Structure and Backbone Dynamics of Partially Disordered Arabidopsis thaliana Phloem Protein 16-1, a Putative mRNA Transporter. Sashi P, et al. Biochemistry, 2018 Feb 13. PMID 29320165
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001084827.2
NM_115405.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Calcium-dependent lipid-binding (CaLB domain) family protein
NP_001078296.1
  • Calcium-dependent lipid-binding (CaLB domain) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G63220.1); Has 2758 Blast hits to 2659 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 1386; Fungi - 195; Plants - 959; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).
NP_191107.1
  • Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G63220.1); Has 2395 Blast hits to 2293 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 1201; Fungi - 119; Plants - 879; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20564081..20566329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084827.2 → NP_001078296.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078296.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MRW6
    Conserved Domains (1) summary
    cd04049
    Location:4 → 127
    C2_putative_Elicitor-responsive_gene; C2 domain present in the putative elicitor-responsive gene

  2. NM_115405.4 → NP_191107.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191107.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VK75, Q9M2T2
    UniProtKB/TrEMBL
    A0A384LCI5, A0A5S9XL13
    Conserved Domains (1) summary
    cd04049
    Location:4 → 128
    C2_putative_Elicitor-responsive_gene; C2 domain present in the putative elicitor-responsive gene
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M2T2.1

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