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Ribosomal L29 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824683, updated on 18-Sep-2024

Summary

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Official Full Name
Ribosomal L29 family protein
Primary source
TAIR:AT3G55170
Locus tag
AT3G55170
See related
Araport:AT3G55170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (20452910..20454530, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene exocyst subunit exo70 family protein H1 Neighboring gene ncRNA Neighboring gene thyroid adenoma-associated-like protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001339724.1
NM_001339725.1
NM_001339726.1
NM_115375.5
NM_202711.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
  
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
part_of cytosolic large ribosomal subunit HDA PubMed 
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Ribosomal L29 family protein
NP_001319756.1
  • Ribosomal L29 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); BEST Arabidopsis thaliana protein match is: Ribosomal L29 family protein (TAIR:AT3G09500.1); Has 1329 Blast hits to 1329 proteins in 532 species: Archae - 155; Bacteria - 387; Metazoa - 302; Fungi - 146; Plants - 143; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).
NP_974440.1
  • Ribosomal L29 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); BEST Arabidopsis thaliana protein match is: Ribosomal L29 family protein (TAIR:AT3G09500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20452910..20454530 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339724.1 → NP_001319756.1  Ribosomal L29 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WT25, Q9M3D2
    UniProtKB/TrEMBL
    A0A654FFZ9
    Conserved Domains (1) summary
    pfam00831
    Location:8 → 60
    Ribosomal_L29; Ribosomal L29 protein

  2. NM_001339725.1 → NP_001327436.1  Ribosomal L29 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LSB4, A0A7G2EH20
    Conserved Domains (1) summary
    pfam00831
    Location:8 → 60
    Ribosomal_L29; Ribosomal L29 protein

  3. NM_115375.5 → NP_191077.1  Ribosomal L29 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191077.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WT25, Q9M3D2
    UniProtKB/TrEMBL
    A0A654FFZ9
    Conserved Domains (1) summary
    pfam00831
    Location:8 → 60
    Ribosomal_L29; Ribosomal L29 protein

  4. NM_001339726.1 → NP_001327437.1  Ribosomal L29 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LSB4, A0A7G2EH20
    Conserved Domains (1) summary
    pfam00831
    Location:8 → 60
    Ribosomal_L29; Ribosomal L29 protein

  5. NM_202711.2 → NP_974440.1  Ribosomal L29 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974440.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WT25, Q9M3D2
    UniProtKB/TrEMBL
    A0A654FFZ9
    Conserved Domains (1) summary
    pfam00831
    Location:8 → 60
    Ribosomal_L29; Ribosomal L29 protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M3D2.1

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