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ATVPS33 Sec1/munc18-like (SM) proteins superfamily [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824651, updated on 18-Sep-2024

Summary

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Official Symbol
ATVPS33
Official Full Name
Sec1/munc18-like (SM) proteins superfamily
Primary source
TAIR:AT3G54860
Locus tag
AT3G54860
See related
Araport:AT3G54860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
VACUOLAR PROTEIN SORTING 33; VPS33
Summary
Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.
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Genomic context

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See ATVPS33 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
23
Sequence:
Chromosome: 3; NC_003074.8 (20324088..20330030, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ras-related small GTP-binding family protein Neighboring gene plant U-box 14 Neighboring gene Armadillo/beta-catenin repeat family protein / kinesin motor family protein Neighboring gene zinc finger protein Neighboring gene chlorophyll a-b binding protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phosphoinositides control the localization of HOPS subunit VPS41, which together with VPS33 mediates vacuole fusion in plants. Brillada C, et al. Proc Natl Acad Sci U S A, 2018 Aug 28. PMID 30104351, Free PMC Article
  2. The AtC-VPS protein complex is localized to the tonoplast and the prevacuolar compartment in arabidopsis. Rojo E, et al. Mol Biol Cell, 2003 Feb. PMID 12589039, Free PMC Article
  3. Distinct sets of tethering complexes, SNARE complexes, and Rab GTPases mediate membrane fusion at the vacuole in Arabidopsis. Takemoto K, et al. Proc Natl Acad Sci U S A, 2018 Mar 6. PMID 29463724, Free PMC Article
  4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001161207.1
NM_115343.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within vacuole organization TAS
Traceable Author Statement
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of CORVET complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of HOPS complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plant-type vacuole membrane IDA
Inferred from Direct Assay
more info
 PubMed 
part_of protein-containing complex IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
Sec1/munc18-like (SM) proteins superfamily
NP_001154679.1
  • ATVPS33; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 45 (TAIR:AT1G77140.1); Has 1433 Blast hits to 1411 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 612; Fungi - 387; Plants - 135; Viruses - 0; Other Eukaryotes - 299 (source: NCBI BLink).
NP_567009.1
  • ATVPS33; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 45 (TAIR:AT1G77140.1); Has 1699 Blast hits to 1677 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 761; Fungi - 432; Plants - 184; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20324088..20330030 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115343.4 → NP_567009.1  Sec1/munc18-like (SM) proteins superfamily [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567009.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94KJ7, Q9SV35
    UniProtKB/TrEMBL
    A0A178VEG6, A0A5S9XLL3, A0A654FIH7
    Conserved Domains (1) summary
    pfam00995
    Location:36 → 580
    Sec1; Sec1 family

  2. NM_001161207.1 → NP_001154679.1  Sec1/munc18-like (SM) proteins superfamily [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154679.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VEG6, F4JE40
    Conserved Domains (1) summary
    pfam00995
    Location:36 → 596
    Sec1; Sec1 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94KJ7.1

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